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scaav sgrna gfp  (Addgene inc)


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    Structured Review

    Addgene inc scaav sgrna gfp
    Scaav Sgrna Gfp, supplied by Addgene inc, used in various techniques. Bioz Stars score: 92/100, based on 7 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/sgrnas/scAAV+GFP+(Plasmid+%2321893)/pmc13022658-113-6-7
    Average 92 stars, based on 7 article reviews
    scaav sgrna gfp - by Bioz Stars, 2026-09
    92/100 stars

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    Related Articles

    Transduction:

    Article Title: eIF4G2-dependent translation restrains pancreatic cancer progression
    Article Snippet: .. KPC cells were transduced with lentivirus expressing Cas9 and sgRNAs (lentiCRISPRV2, Addgene # 52961). ..

    Article Title: KLF5 enables dichotomous lineage programs in pancreatic cancer via the AAA+ ATPase coactivators RUVBL1 and RUVBL2
    Article Snippet: .. For GFP-depletion assays, cells stably expressing Cas9 from a LentiV-Cas9-blasticidin vector were lentivirally transduced with sgRNAs in an LRG2.1_puromycin vector (Addgene # 125594) at a ~30–50% GFP-positivity rate. .. GFP percentage was measured using a MilliporeSigma® Guava easyCyte Flow Cytometer on day three post viral transduction, then once every three days for 21 days.

    Expressing:

    Article Title: eIF4G2-dependent translation restrains pancreatic cancer progression
    Article Snippet: .. KPC cells were transduced with lentivirus expressing Cas9 and sgRNAs (lentiCRISPRV2, Addgene # 52961). ..

    Article Title: KLF5 enables dichotomous lineage programs in pancreatic cancer via the AAA+ ATPase coactivators RUVBL1 and RUVBL2
    Article Snippet: .. For GFP-depletion assays, cells stably expressing Cas9 from a LentiV-Cas9-blasticidin vector were lentivirally transduced with sgRNAs in an LRG2.1_puromycin vector (Addgene # 125594) at a ~30–50% GFP-positivity rate. .. GFP percentage was measured using a MilliporeSigma® Guava easyCyte Flow Cytometer on day three post viral transduction, then once every three days for 21 days.

    Article Title: Target Discovery in Head-and-Neck Squamous Cell Carcinoma: Genome-Wide CRISPR Screens Illuminate Therapeutic Resistance and Actionable Dependencies
    Article Snippet: Goto et al. [ ] , CAL27 , Human kinome CRISPR pooled library (Brunello, RRID: Addgene_75312); Coverage: 650×; MOI: 0.3. , INK128 (10 nM) treatment until ~20 population doublings. Puromycin selection not specified , Treatment-Perturbed (mTOR inhibitor INK128 10 nM) , CDK4/6 signaling , - Identified synthetic lethality between mTOR and CDK4/6 signaling - Combination of INK128 and palbociclib leads to synergistic killing in vitro/in vivo - Mechanism: blocking eIF4G-CCNE1 complex formation. , N/A. .. Qiu et al. [ ] , SCC15 , Human GeCKO v2 CRISPR library (A + B sets, Addgene #1000000049), 122,411 sgRNAs targeting 19,052 genes + 1864 miRNAs; Coverage: 500×; MOI: 0.3 , Puromycin (2 μg/mL × 7 days). Cells exposed to oHSV-1 for 48 h (control) and 72 h (treatment) for positive/negative selection , Treatment-Perturbed (oHSV-1 infection) , SUV39H2 , - Identified SUV39H2 as a host barrier to oHSV-1 - Genetic loss or OTS186935 boosts viral gene expression/replication and T cell infiltration, thereby enhancing anti-tumor efficacy in vitro and in vivo. , N/A. .. Allevato et al. [ ] , CAL33 , Brunello whole-genome CRISPR library (Addgene #73178), 76,441 sgRNAs targeting 19,114 genes + 1000 non-targeting controls; Coverage: 300×; MOI: 0.5 , Vehicle or DON (0.25 μM) treatment until ~18 population doublings. Puromycin selection not specified , Treatment-Perturbed (Glutamine antagonist DON) , GPX4 , - Defined synthetic lethality between GPX4 and glutamine antagonism - Combination of DON and RSL3 induce ferroptotic cell death in vitro/in vivo. , N/A.

    CRISPR:

    Article Title: A systematic CRISPR screen reveals an NBL1-mediated Jak/Stat3 crosstalk to promote ovarian cancer metastasis
    Article Snippet: All the mediums were supplemented with 10% fetal bovine serum (BI, China) and 1% penicillin–streptomycin (Invitrogen, China) and maintained in an atmosphere of 5% CO 2 and 95% air at 37 °C. .. The method for the highly metastatic gene screening process using the CRISPR/Cas9 library has been established., Briefly, the procedure was as follows: the GeCKO v2 human sgRNA library (developed by Zhangfeng's lab and obtained from Addgene) contains 122,756 sgRNAs targeting 19,050 protein-coding genes and 1864 miRNAs, with an average of 6 sgRNAs per gene to ensure coverage redundancy. ..

    Article Title: CRISPR-Cas9 Genome and Double-Knockout Screening to Identify Novel Therapeutic Targets for Chemoresistance in Triple-Negative Breast Cancer
    Article Snippet: .. We acquired the Toronto Knockout CRISPR (TKOv3) library, which contains 71,090 sgRNAs targeting 18,049 protein-coding genes, from Addgene (Watertown, MA, USA) and applied electroporation to expand the library 1000-fold. ..

    Article Title: Target Discovery in Head-and-Neck Squamous Cell Carcinoma: Genome-Wide CRISPR Screens Illuminate Therapeutic Resistance and Actionable Dependencies
    Article Snippet: Qiu et al. [ ] , SCC15 , Human GeCKO v2 CRISPR library (A + B sets, Addgene #1000000049), 122,411 sgRNAs targeting 19,052 genes + 1864 miRNAs; Coverage: 500×; MOI: 0.3 , Puromycin (2 μg/mL × 7 days). Cells exposed to oHSV-1 for 48 h (control) and 72 h (treatment) for positive/negative selection , Treatment-Perturbed (oHSV-1 infection) , SUV39H2 , - Identified SUV39H2 as a host barrier to oHSV-1 - Genetic loss or OTS186935 boosts viral gene expression/replication and T cell infiltration, thereby enhancing anti-tumor efficacy in vitro and in vivo. , N/A. .. Allevato et al. [ ] , CAL33 , Brunello whole-genome CRISPR library (Addgene #73178), 76,441 sgRNAs targeting 19,114 genes + 1000 non-targeting controls; Coverage: 300×; MOI: 0.5 , Vehicle or DON (0.25 μM) treatment until ~18 population doublings. Puromycin selection not specified , Treatment-Perturbed (Glutamine antagonist DON) , GPX4 , - Defined synthetic lethality between GPX4 and glutamine antagonism - Combination of DON and RSL3 induce ferroptotic cell death in vitro/in vivo. , N/A. .. Wang et al. [ ] , UMSCC-49, UMSCC-108, UMSCC-97 , Human GeCKO v1 (Addgene #49535) or v2 (Addgene #52961) library and Human Kinase Lentiviral Pool (Sigma HKCRISPR); Coverage: 300×; MOI: 0.3 , Puromycin for 7 days. Treated with Erlotinib (1 μM) or Gefitinib (1 μM)—duration not specified , Treatment-Perturbed (EGFR inhibitor Erlotinib or Gefitinib 1 μM) , PIK3C2A , - Identified PIK3C2A as synthetic-lethal partner of EGFR-TKI , - No selective PIK3C2A inhibitor available for pharmacologic validation.

    Article Title: Target Discovery in Head-and-Neck Squamous Cell Carcinoma: Genome-Wide CRISPR Screens Illuminate Therapeutic Resistance and Actionable Dependencies
    Article Snippet: .. Chai et al. [ ] , ORL48, ORL115, ORL136, ORL150, ORL153, ORL156, ORL166, ORL174, ORL188, ORL195, ORL204, ORL207, ORL214, ORL215 , Human Improved Genome-wide Knockout CRISPR Library v1 (Addgene #67989), 90,709 sgRNAs targeting 18,010 genes; Coverage: 100×; MOI: 0.3 , Puromycin (2 μg/mL) for 3–4 days post-transduction; cells harvested on day 18 for genomic DNA extraction. , Baseline (proliferation essentiality) , YAP1, WWTR1 (TAZ), and TEAD1 , - Identified 918 fitness genes - Verified that YAP1 and WWTR1 serve as Hippo-pathway drivers in vitro - Highlighted Hippo signaling as a core dependency in HNSCC , - No in vivo validation - Mechanistic link to downstream effectors not tested. .. Wang et al. [ ] , C666-1, NP69 , Brunello human-genome-wide CRISPR knockout library (Addgene #73178), targeting 19,114 genes; Coverage: 500×; MOI: 0.3 , Puromycin (3 μg/mL) for selection. Cells cultured for 28 days and then harvested , Baseline (dependency screen) , KAT7/BRD1/MEAF6/BRPF1/KAT8, NF-κB signaling (CHUK/IKBKB/IKBKG), de novo purine synthesis (ADSL/GART/PAICS/ATIC), linear ubiquitination (RNF31-RBCK1-SHARPIN and OTULIN), and p53 control (MDM2); , - A total of 711 essential genes identified - Key pathways: MYST acetyltransferases, NF-κB, purine synthesis, and p53 control - Verified that gene depletion reduced NPC cell growth in vitro , - No in vivo validation.

    Article Title: CRISPR-Cas9 Genome and Double-Knockout Screening to Identify Novel Therapeutic Targets for Chemoresistance in Triple-Negative Breast Cancer.
    Article Snippet: .. Construction of TKOv3 Library We acquired the Toronto Knockout CRISPR (TKOv3) library, which contains 71,090 sgRNAs targeting 18,049 protein-coding genes, from Addgene (Watertown, MA, USA) and applied electroporation to expand the library 1000-fold. ..

    Article Title: Target Discovery in Head-and-Neck Squamous Cell Carcinoma: Genome-Wide CRISPR Screens Illuminate Therapeutic Resistance and Actionable Dependencies
    Article Snippet: Goto et al. [ ] , CAL27 , Human kinome CRISPR pooled library (Brunello, RRID: Addgene_75312); Coverage: 650×; MOI: 0.3. , INK128 (10 nM) treatment until ~20 population doublings. Puromycin selection not specified , Treatment-Perturbed (mTOR inhibitor INK128 10 nM) , CDK4/6 signaling , - Identified synthetic lethality between mTOR and CDK4/6 signaling - Combination of INK128 and palbociclib leads to synergistic killing in vitro/in vivo - Mechanism: blocking eIF4G-CCNE1 complex formation. , N/A. .. Qiu et al. [ ] , SCC15 , Human GeCKO v2 CRISPR library (A + B sets, Addgene #1000000049), 122,411 sgRNAs targeting 19,052 genes + 1864 miRNAs; Coverage: 500×; MOI: 0.3 , Puromycin (2 μg/mL × 7 days). Cells exposed to oHSV-1 for 48 h (control) and 72 h (treatment) for positive/negative selection , Treatment-Perturbed (oHSV-1 infection) , SUV39H2 , - Identified SUV39H2 as a host barrier to oHSV-1 - Genetic loss or OTS186935 boosts viral gene expression/replication and T cell infiltration, thereby enhancing anti-tumor efficacy in vitro and in vivo. , N/A. .. Allevato et al. [ ] , CAL33 , Brunello whole-genome CRISPR library (Addgene #73178), 76,441 sgRNAs targeting 19,114 genes + 1000 non-targeting controls; Coverage: 300×; MOI: 0.5 , Vehicle or DON (0.25 μM) treatment until ~18 population doublings. Puromycin selection not specified , Treatment-Perturbed (Glutamine antagonist DON) , GPX4 , - Defined synthetic lethality between GPX4 and glutamine antagonism - Combination of DON and RSL3 induce ferroptotic cell death in vitro/in vivo. , N/A.

    Knock-Out:

    Article Title: CRISPR-Cas9 Genome and Double-Knockout Screening to Identify Novel Therapeutic Targets for Chemoresistance in Triple-Negative Breast Cancer
    Article Snippet: .. We acquired the Toronto Knockout CRISPR (TKOv3) library, which contains 71,090 sgRNAs targeting 18,049 protein-coding genes, from Addgene (Watertown, MA, USA) and applied electroporation to expand the library 1000-fold. ..

    Article Title: Target Discovery in Head-and-Neck Squamous Cell Carcinoma: Genome-Wide CRISPR Screens Illuminate Therapeutic Resistance and Actionable Dependencies
    Article Snippet: .. Chai et al. [ ] , ORL48, ORL115, ORL136, ORL150, ORL153, ORL156, ORL166, ORL174, ORL188, ORL195, ORL204, ORL207, ORL214, ORL215 , Human Improved Genome-wide Knockout CRISPR Library v1 (Addgene #67989), 90,709 sgRNAs targeting 18,010 genes; Coverage: 100×; MOI: 0.3 , Puromycin (2 μg/mL) for 3–4 days post-transduction; cells harvested on day 18 for genomic DNA extraction. , Baseline (proliferation essentiality) , YAP1, WWTR1 (TAZ), and TEAD1 , - Identified 918 fitness genes - Verified that YAP1 and WWTR1 serve as Hippo-pathway drivers in vitro - Highlighted Hippo signaling as a core dependency in HNSCC , - No in vivo validation - Mechanistic link to downstream effectors not tested. .. Wang et al. [ ] , C666-1, NP69 , Brunello human-genome-wide CRISPR knockout library (Addgene #73178), targeting 19,114 genes; Coverage: 500×; MOI: 0.3 , Puromycin (3 μg/mL) for selection. Cells cultured for 28 days and then harvested , Baseline (dependency screen) , KAT7/BRD1/MEAF6/BRPF1/KAT8, NF-κB signaling (CHUK/IKBKB/IKBKG), de novo purine synthesis (ADSL/GART/PAICS/ATIC), linear ubiquitination (RNF31-RBCK1-SHARPIN and OTULIN), and p53 control (MDM2); , - A total of 711 essential genes identified - Key pathways: MYST acetyltransferases, NF-κB, purine synthesis, and p53 control - Verified that gene depletion reduced NPC cell growth in vitro , - No in vivo validation.

    Article Title: CRISPR-Cas9 Genome and Double-Knockout Screening to Identify Novel Therapeutic Targets for Chemoresistance in Triple-Negative Breast Cancer.
    Article Snippet: .. Construction of TKOv3 Library We acquired the Toronto Knockout CRISPR (TKOv3) library, which contains 71,090 sgRNAs targeting 18,049 protein-coding genes, from Addgene (Watertown, MA, USA) and applied electroporation to expand the library 1000-fold. ..

    Electroporation:

    Article Title: CRISPR-Cas9 Genome and Double-Knockout Screening to Identify Novel Therapeutic Targets for Chemoresistance in Triple-Negative Breast Cancer
    Article Snippet: .. We acquired the Toronto Knockout CRISPR (TKOv3) library, which contains 71,090 sgRNAs targeting 18,049 protein-coding genes, from Addgene (Watertown, MA, USA) and applied electroporation to expand the library 1000-fold. ..

    Article Title: CRISPR-Cas9 Genome and Double-Knockout Screening to Identify Novel Therapeutic Targets for Chemoresistance in Triple-Negative Breast Cancer.
    Article Snippet: .. Construction of TKOv3 Library We acquired the Toronto Knockout CRISPR (TKOv3) library, which contains 71,090 sgRNAs targeting 18,049 protein-coding genes, from Addgene (Watertown, MA, USA) and applied electroporation to expand the library 1000-fold. ..

    Selection:

    Article Title: Target Discovery in Head-and-Neck Squamous Cell Carcinoma: Genome-Wide CRISPR Screens Illuminate Therapeutic Resistance and Actionable Dependencies
    Article Snippet: Qiu et al. [ ] , SCC15 , Human GeCKO v2 CRISPR library (A + B sets, Addgene #1000000049), 122,411 sgRNAs targeting 19,052 genes + 1864 miRNAs; Coverage: 500×; MOI: 0.3 , Puromycin (2 μg/mL × 7 days). Cells exposed to oHSV-1 for 48 h (control) and 72 h (treatment) for positive/negative selection , Treatment-Perturbed (oHSV-1 infection) , SUV39H2 , - Identified SUV39H2 as a host barrier to oHSV-1 - Genetic loss or OTS186935 boosts viral gene expression/replication and T cell infiltration, thereby enhancing anti-tumor efficacy in vitro and in vivo. , N/A. .. Allevato et al. [ ] , CAL33 , Brunello whole-genome CRISPR library (Addgene #73178), 76,441 sgRNAs targeting 19,114 genes + 1000 non-targeting controls; Coverage: 300×; MOI: 0.5 , Vehicle or DON (0.25 μM) treatment until ~18 population doublings. Puromycin selection not specified , Treatment-Perturbed (Glutamine antagonist DON) , GPX4 , - Defined synthetic lethality between GPX4 and glutamine antagonism - Combination of DON and RSL3 induce ferroptotic cell death in vitro/in vivo. , N/A. .. Wang et al. [ ] , UMSCC-49, UMSCC-108, UMSCC-97 , Human GeCKO v1 (Addgene #49535) or v2 (Addgene #52961) library and Human Kinase Lentiviral Pool (Sigma HKCRISPR); Coverage: 300×; MOI: 0.3 , Puromycin for 7 days. Treated with Erlotinib (1 μM) or Gefitinib (1 μM)—duration not specified , Treatment-Perturbed (EGFR inhibitor Erlotinib or Gefitinib 1 μM) , PIK3C2A , - Identified PIK3C2A as synthetic-lethal partner of EGFR-TKI , - No selective PIK3C2A inhibitor available for pharmacologic validation.

    Article Title: Target Discovery in Head-and-Neck Squamous Cell Carcinoma: Genome-Wide CRISPR Screens Illuminate Therapeutic Resistance and Actionable Dependencies
    Article Snippet: Goto et al. [ ] , CAL27 , Human kinome CRISPR pooled library (Brunello, RRID: Addgene_75312); Coverage: 650×; MOI: 0.3. , INK128 (10 nM) treatment until ~20 population doublings. Puromycin selection not specified , Treatment-Perturbed (mTOR inhibitor INK128 10 nM) , CDK4/6 signaling , - Identified synthetic lethality between mTOR and CDK4/6 signaling - Combination of INK128 and palbociclib leads to synergistic killing in vitro/in vivo - Mechanism: blocking eIF4G-CCNE1 complex formation. , N/A. .. Qiu et al. [ ] , SCC15 , Human GeCKO v2 CRISPR library (A + B sets, Addgene #1000000049), 122,411 sgRNAs targeting 19,052 genes + 1864 miRNAs; Coverage: 500×; MOI: 0.3 , Puromycin (2 μg/mL × 7 days). Cells exposed to oHSV-1 for 48 h (control) and 72 h (treatment) for positive/negative selection , Treatment-Perturbed (oHSV-1 infection) , SUV39H2 , - Identified SUV39H2 as a host barrier to oHSV-1 - Genetic loss or OTS186935 boosts viral gene expression/replication and T cell infiltration, thereby enhancing anti-tumor efficacy in vitro and in vivo. , N/A. .. Allevato et al. [ ] , CAL33 , Brunello whole-genome CRISPR library (Addgene #73178), 76,441 sgRNAs targeting 19,114 genes + 1000 non-targeting controls; Coverage: 300×; MOI: 0.5 , Vehicle or DON (0.25 μM) treatment until ~18 population doublings. Puromycin selection not specified , Treatment-Perturbed (Glutamine antagonist DON) , GPX4 , - Defined synthetic lethality between GPX4 and glutamine antagonism - Combination of DON and RSL3 induce ferroptotic cell death in vitro/in vivo. , N/A.

    Stable Transfection:

    Article Title: KLF5 enables dichotomous lineage programs in pancreatic cancer via the AAA+ ATPase coactivators RUVBL1 and RUVBL2
    Article Snippet: .. For GFP-depletion assays, cells stably expressing Cas9 from a LentiV-Cas9-blasticidin vector were lentivirally transduced with sgRNAs in an LRG2.1_puromycin vector (Addgene # 125594) at a ~30–50% GFP-positivity rate. .. GFP percentage was measured using a MilliporeSigma® Guava easyCyte Flow Cytometer on day three post viral transduction, then once every three days for 21 days.

    Genome Wide:

    Article Title: Target Discovery in Head-and-Neck Squamous Cell Carcinoma: Genome-Wide CRISPR Screens Illuminate Therapeutic Resistance and Actionable Dependencies
    Article Snippet: .. Chai et al. [ ] , ORL48, ORL115, ORL136, ORL150, ORL153, ORL156, ORL166, ORL174, ORL188, ORL195, ORL204, ORL207, ORL214, ORL215 , Human Improved Genome-wide Knockout CRISPR Library v1 (Addgene #67989), 90,709 sgRNAs targeting 18,010 genes; Coverage: 100×; MOI: 0.3 , Puromycin (2 μg/mL) for 3–4 days post-transduction; cells harvested on day 18 for genomic DNA extraction. , Baseline (proliferation essentiality) , YAP1, WWTR1 (TAZ), and TEAD1 , - Identified 918 fitness genes - Verified that YAP1 and WWTR1 serve as Hippo-pathway drivers in vitro - Highlighted Hippo signaling as a core dependency in HNSCC , - No in vivo validation - Mechanistic link to downstream effectors not tested. .. Wang et al. [ ] , C666-1, NP69 , Brunello human-genome-wide CRISPR knockout library (Addgene #73178), targeting 19,114 genes; Coverage: 500×; MOI: 0.3 , Puromycin (3 μg/mL) for selection. Cells cultured for 28 days and then harvested , Baseline (dependency screen) , KAT7/BRD1/MEAF6/BRPF1/KAT8, NF-κB signaling (CHUK/IKBKB/IKBKG), de novo purine synthesis (ADSL/GART/PAICS/ATIC), linear ubiquitination (RNF31-RBCK1-SHARPIN and OTULIN), and p53 control (MDM2); , - A total of 711 essential genes identified - Key pathways: MYST acetyltransferases, NF-κB, purine synthesis, and p53 control - Verified that gene depletion reduced NPC cell growth in vitro , - No in vivo validation.

    DNA Extraction:

    Article Title: Target Discovery in Head-and-Neck Squamous Cell Carcinoma: Genome-Wide CRISPR Screens Illuminate Therapeutic Resistance and Actionable Dependencies
    Article Snippet: .. Chai et al. [ ] , ORL48, ORL115, ORL136, ORL150, ORL153, ORL156, ORL166, ORL174, ORL188, ORL195, ORL204, ORL207, ORL214, ORL215 , Human Improved Genome-wide Knockout CRISPR Library v1 (Addgene #67989), 90,709 sgRNAs targeting 18,010 genes; Coverage: 100×; MOI: 0.3 , Puromycin (2 μg/mL) for 3–4 days post-transduction; cells harvested on day 18 for genomic DNA extraction. , Baseline (proliferation essentiality) , YAP1, WWTR1 (TAZ), and TEAD1 , - Identified 918 fitness genes - Verified that YAP1 and WWTR1 serve as Hippo-pathway drivers in vitro - Highlighted Hippo signaling as a core dependency in HNSCC , - No in vivo validation - Mechanistic link to downstream effectors not tested. .. Wang et al. [ ] , C666-1, NP69 , Brunello human-genome-wide CRISPR knockout library (Addgene #73178), targeting 19,114 genes; Coverage: 500×; MOI: 0.3 , Puromycin (3 μg/mL) for selection. Cells cultured for 28 days and then harvested , Baseline (dependency screen) , KAT7/BRD1/MEAF6/BRPF1/KAT8, NF-κB signaling (CHUK/IKBKB/IKBKG), de novo purine synthesis (ADSL/GART/PAICS/ATIC), linear ubiquitination (RNF31-RBCK1-SHARPIN and OTULIN), and p53 control (MDM2); , - A total of 711 essential genes identified - Key pathways: MYST acetyltransferases, NF-κB, purine synthesis, and p53 control - Verified that gene depletion reduced NPC cell growth in vitro , - No in vivo validation.

    In Vitro:

    Article Title: Target Discovery in Head-and-Neck Squamous Cell Carcinoma: Genome-Wide CRISPR Screens Illuminate Therapeutic Resistance and Actionable Dependencies
    Article Snippet: .. Chai et al. [ ] , ORL48, ORL115, ORL136, ORL150, ORL153, ORL156, ORL166, ORL174, ORL188, ORL195, ORL204, ORL207, ORL214, ORL215 , Human Improved Genome-wide Knockout CRISPR Library v1 (Addgene #67989), 90,709 sgRNAs targeting 18,010 genes; Coverage: 100×; MOI: 0.3 , Puromycin (2 μg/mL) for 3–4 days post-transduction; cells harvested on day 18 for genomic DNA extraction. , Baseline (proliferation essentiality) , YAP1, WWTR1 (TAZ), and TEAD1 , - Identified 918 fitness genes - Verified that YAP1 and WWTR1 serve as Hippo-pathway drivers in vitro - Highlighted Hippo signaling as a core dependency in HNSCC , - No in vivo validation - Mechanistic link to downstream effectors not tested. .. Wang et al. [ ] , C666-1, NP69 , Brunello human-genome-wide CRISPR knockout library (Addgene #73178), targeting 19,114 genes; Coverage: 500×; MOI: 0.3 , Puromycin (3 μg/mL) for selection. Cells cultured for 28 days and then harvested , Baseline (dependency screen) , KAT7/BRD1/MEAF6/BRPF1/KAT8, NF-κB signaling (CHUK/IKBKB/IKBKG), de novo purine synthesis (ADSL/GART/PAICS/ATIC), linear ubiquitination (RNF31-RBCK1-SHARPIN and OTULIN), and p53 control (MDM2); , - A total of 711 essential genes identified - Key pathways: MYST acetyltransferases, NF-κB, purine synthesis, and p53 control - Verified that gene depletion reduced NPC cell growth in vitro , - No in vivo validation.

    Article Title: Target Discovery in Head-and-Neck Squamous Cell Carcinoma: Genome-Wide CRISPR Screens Illuminate Therapeutic Resistance and Actionable Dependencies
    Article Snippet: Goto et al. [ ] , CAL27 , Human kinome CRISPR pooled library (Brunello, RRID: Addgene_75312); Coverage: 650×; MOI: 0.3. , INK128 (10 nM) treatment until ~20 population doublings. Puromycin selection not specified , Treatment-Perturbed (mTOR inhibitor INK128 10 nM) , CDK4/6 signaling , - Identified synthetic lethality between mTOR and CDK4/6 signaling - Combination of INK128 and palbociclib leads to synergistic killing in vitro/in vivo - Mechanism: blocking eIF4G-CCNE1 complex formation. , N/A. .. Qiu et al. [ ] , SCC15 , Human GeCKO v2 CRISPR library (A + B sets, Addgene #1000000049), 122,411 sgRNAs targeting 19,052 genes + 1864 miRNAs; Coverage: 500×; MOI: 0.3 , Puromycin (2 μg/mL × 7 days). Cells exposed to oHSV-1 for 48 h (control) and 72 h (treatment) for positive/negative selection , Treatment-Perturbed (oHSV-1 infection) , SUV39H2 , - Identified SUV39H2 as a host barrier to oHSV-1 - Genetic loss or OTS186935 boosts viral gene expression/replication and T cell infiltration, thereby enhancing anti-tumor efficacy in vitro and in vivo. , N/A. .. Allevato et al. [ ] , CAL33 , Brunello whole-genome CRISPR library (Addgene #73178), 76,441 sgRNAs targeting 19,114 genes + 1000 non-targeting controls; Coverage: 300×; MOI: 0.5 , Vehicle or DON (0.25 μM) treatment until ~18 population doublings. Puromycin selection not specified , Treatment-Perturbed (Glutamine antagonist DON) , GPX4 , - Defined synthetic lethality between GPX4 and glutamine antagonism - Combination of DON and RSL3 induce ferroptotic cell death in vitro/in vivo. , N/A.

    In Vivo:

    Article Title: Target Discovery in Head-and-Neck Squamous Cell Carcinoma: Genome-Wide CRISPR Screens Illuminate Therapeutic Resistance and Actionable Dependencies
    Article Snippet: .. Chai et al. [ ] , ORL48, ORL115, ORL136, ORL150, ORL153, ORL156, ORL166, ORL174, ORL188, ORL195, ORL204, ORL207, ORL214, ORL215 , Human Improved Genome-wide Knockout CRISPR Library v1 (Addgene #67989), 90,709 sgRNAs targeting 18,010 genes; Coverage: 100×; MOI: 0.3 , Puromycin (2 μg/mL) for 3–4 days post-transduction; cells harvested on day 18 for genomic DNA extraction. , Baseline (proliferation essentiality) , YAP1, WWTR1 (TAZ), and TEAD1 , - Identified 918 fitness genes - Verified that YAP1 and WWTR1 serve as Hippo-pathway drivers in vitro - Highlighted Hippo signaling as a core dependency in HNSCC , - No in vivo validation - Mechanistic link to downstream effectors not tested. .. Wang et al. [ ] , C666-1, NP69 , Brunello human-genome-wide CRISPR knockout library (Addgene #73178), targeting 19,114 genes; Coverage: 500×; MOI: 0.3 , Puromycin (3 μg/mL) for selection. Cells cultured for 28 days and then harvested , Baseline (dependency screen) , KAT7/BRD1/MEAF6/BRPF1/KAT8, NF-κB signaling (CHUK/IKBKB/IKBKG), de novo purine synthesis (ADSL/GART/PAICS/ATIC), linear ubiquitination (RNF31-RBCK1-SHARPIN and OTULIN), and p53 control (MDM2); , - A total of 711 essential genes identified - Key pathways: MYST acetyltransferases, NF-κB, purine synthesis, and p53 control - Verified that gene depletion reduced NPC cell growth in vitro , - No in vivo validation.

    Article Title: Target Discovery in Head-and-Neck Squamous Cell Carcinoma: Genome-Wide CRISPR Screens Illuminate Therapeutic Resistance and Actionable Dependencies
    Article Snippet: Goto et al. [ ] , CAL27 , Human kinome CRISPR pooled library (Brunello, RRID: Addgene_75312); Coverage: 650×; MOI: 0.3. , INK128 (10 nM) treatment until ~20 population doublings. Puromycin selection not specified , Treatment-Perturbed (mTOR inhibitor INK128 10 nM) , CDK4/6 signaling , - Identified synthetic lethality between mTOR and CDK4/6 signaling - Combination of INK128 and palbociclib leads to synergistic killing in vitro/in vivo - Mechanism: blocking eIF4G-CCNE1 complex formation. , N/A. .. Qiu et al. [ ] , SCC15 , Human GeCKO v2 CRISPR library (A + B sets, Addgene #1000000049), 122,411 sgRNAs targeting 19,052 genes + 1864 miRNAs; Coverage: 500×; MOI: 0.3 , Puromycin (2 μg/mL × 7 days). Cells exposed to oHSV-1 for 48 h (control) and 72 h (treatment) for positive/negative selection , Treatment-Perturbed (oHSV-1 infection) , SUV39H2 , - Identified SUV39H2 as a host barrier to oHSV-1 - Genetic loss or OTS186935 boosts viral gene expression/replication and T cell infiltration, thereby enhancing anti-tumor efficacy in vitro and in vivo. , N/A. .. Allevato et al. [ ] , CAL33 , Brunello whole-genome CRISPR library (Addgene #73178), 76,441 sgRNAs targeting 19,114 genes + 1000 non-targeting controls; Coverage: 300×; MOI: 0.5 , Vehicle or DON (0.25 μM) treatment until ~18 population doublings. Puromycin selection not specified , Treatment-Perturbed (Glutamine antagonist DON) , GPX4 , - Defined synthetic lethality between GPX4 and glutamine antagonism - Combination of DON and RSL3 induce ferroptotic cell death in vitro/in vivo. , N/A.

    Biomarker Discovery:

    Article Title: Target Discovery in Head-and-Neck Squamous Cell Carcinoma: Genome-Wide CRISPR Screens Illuminate Therapeutic Resistance and Actionable Dependencies
    Article Snippet: .. Chai et al. [ ] , ORL48, ORL115, ORL136, ORL150, ORL153, ORL156, ORL166, ORL174, ORL188, ORL195, ORL204, ORL207, ORL214, ORL215 , Human Improved Genome-wide Knockout CRISPR Library v1 (Addgene #67989), 90,709 sgRNAs targeting 18,010 genes; Coverage: 100×; MOI: 0.3 , Puromycin (2 μg/mL) for 3–4 days post-transduction; cells harvested on day 18 for genomic DNA extraction. , Baseline (proliferation essentiality) , YAP1, WWTR1 (TAZ), and TEAD1 , - Identified 918 fitness genes - Verified that YAP1 and WWTR1 serve as Hippo-pathway drivers in vitro - Highlighted Hippo signaling as a core dependency in HNSCC , - No in vivo validation - Mechanistic link to downstream effectors not tested. .. Wang et al. [ ] , C666-1, NP69 , Brunello human-genome-wide CRISPR knockout library (Addgene #73178), targeting 19,114 genes; Coverage: 500×; MOI: 0.3 , Puromycin (3 μg/mL) for selection. Cells cultured for 28 days and then harvested , Baseline (dependency screen) , KAT7/BRD1/MEAF6/BRPF1/KAT8, NF-κB signaling (CHUK/IKBKB/IKBKG), de novo purine synthesis (ADSL/GART/PAICS/ATIC), linear ubiquitination (RNF31-RBCK1-SHARPIN and OTULIN), and p53 control (MDM2); , - A total of 711 essential genes identified - Key pathways: MYST acetyltransferases, NF-κB, purine synthesis, and p53 control - Verified that gene depletion reduced NPC cell growth in vitro , - No in vivo validation.

    Control:

    Article Title: Target Discovery in Head-and-Neck Squamous Cell Carcinoma: Genome-Wide CRISPR Screens Illuminate Therapeutic Resistance and Actionable Dependencies
    Article Snippet: Goto et al. [ ] , CAL27 , Human kinome CRISPR pooled library (Brunello, RRID: Addgene_75312); Coverage: 650×; MOI: 0.3. , INK128 (10 nM) treatment until ~20 population doublings. Puromycin selection not specified , Treatment-Perturbed (mTOR inhibitor INK128 10 nM) , CDK4/6 signaling , - Identified synthetic lethality between mTOR and CDK4/6 signaling - Combination of INK128 and palbociclib leads to synergistic killing in vitro/in vivo - Mechanism: blocking eIF4G-CCNE1 complex formation. , N/A. .. Qiu et al. [ ] , SCC15 , Human GeCKO v2 CRISPR library (A + B sets, Addgene #1000000049), 122,411 sgRNAs targeting 19,052 genes + 1864 miRNAs; Coverage: 500×; MOI: 0.3 , Puromycin (2 μg/mL × 7 days). Cells exposed to oHSV-1 for 48 h (control) and 72 h (treatment) for positive/negative selection , Treatment-Perturbed (oHSV-1 infection) , SUV39H2 , - Identified SUV39H2 as a host barrier to oHSV-1 - Genetic loss or OTS186935 boosts viral gene expression/replication and T cell infiltration, thereby enhancing anti-tumor efficacy in vitro and in vivo. , N/A. .. Allevato et al. [ ] , CAL33 , Brunello whole-genome CRISPR library (Addgene #73178), 76,441 sgRNAs targeting 19,114 genes + 1000 non-targeting controls; Coverage: 300×; MOI: 0.5 , Vehicle or DON (0.25 μM) treatment until ~18 population doublings. Puromycin selection not specified , Treatment-Perturbed (Glutamine antagonist DON) , GPX4 , - Defined synthetic lethality between GPX4 and glutamine antagonism - Combination of DON and RSL3 induce ferroptotic cell death in vitro/in vivo. , N/A.

    Infection:

    Article Title: Target Discovery in Head-and-Neck Squamous Cell Carcinoma: Genome-Wide CRISPR Screens Illuminate Therapeutic Resistance and Actionable Dependencies
    Article Snippet: Goto et al. [ ] , CAL27 , Human kinome CRISPR pooled library (Brunello, RRID: Addgene_75312); Coverage: 650×; MOI: 0.3. , INK128 (10 nM) treatment until ~20 population doublings. Puromycin selection not specified , Treatment-Perturbed (mTOR inhibitor INK128 10 nM) , CDK4/6 signaling , - Identified synthetic lethality between mTOR and CDK4/6 signaling - Combination of INK128 and palbociclib leads to synergistic killing in vitro/in vivo - Mechanism: blocking eIF4G-CCNE1 complex formation. , N/A. .. Qiu et al. [ ] , SCC15 , Human GeCKO v2 CRISPR library (A + B sets, Addgene #1000000049), 122,411 sgRNAs targeting 19,052 genes + 1864 miRNAs; Coverage: 500×; MOI: 0.3 , Puromycin (2 μg/mL × 7 days). Cells exposed to oHSV-1 for 48 h (control) and 72 h (treatment) for positive/negative selection , Treatment-Perturbed (oHSV-1 infection) , SUV39H2 , - Identified SUV39H2 as a host barrier to oHSV-1 - Genetic loss or OTS186935 boosts viral gene expression/replication and T cell infiltration, thereby enhancing anti-tumor efficacy in vitro and in vivo. , N/A. .. Allevato et al. [ ] , CAL33 , Brunello whole-genome CRISPR library (Addgene #73178), 76,441 sgRNAs targeting 19,114 genes + 1000 non-targeting controls; Coverage: 300×; MOI: 0.5 , Vehicle or DON (0.25 μM) treatment until ~18 population doublings. Puromycin selection not specified , Treatment-Perturbed (Glutamine antagonist DON) , GPX4 , - Defined synthetic lethality between GPX4 and glutamine antagonism - Combination of DON and RSL3 induce ferroptotic cell death in vitro/in vivo. , N/A.



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